Annals of the American Thoracic Society

On August 10, 2022, President Biden signed the Honoring our Promise to Address Comprehensive Toxics (PACT) Act, significantly expanding benefits and services for Veterans. For the first time, U.S. law names interstitial lung disease (ILD) as a presumptive military service–connected disorder, thus conferring new healthcare benefits for Veterans with ILD. In addition, the PACT Act directs the Secretary of Veterans Affairs to convene interagency working groups to develop new strategic research plans that explore the role of military exposures as a risk factor for lung disease. In this perspective, we identify synergistic priority research areas that can leverage Veterans Affairs (VA) resources to bridge existing evidence gaps and accelerate the implementation of best practices for the mutual benefit of Veterans and the ILD community at large.

ILDs are a group of heterogenous disorders that frequently result in lung scarring and are grouped together because of similar clinical, radiographic, and/or pathologic manifestations. Clinical classifications and mechanistic understanding have evolved over the past 2 decades, in part driven by networks of tertiary care referral centers that enrolled patients into clinical registries and collaborations between academia and industry leading to the development of new therapeutics. These partnerships have helped further our understanding of ILD epidemiology and have led to breakthrough therapies. Although important in laying the foundation for ILD research, the efficiency of these efforts has been constrained by traditional research methodology that relies on individual patient recruitment. The era of electronic health records (EHRs) and “big data” is changing the landscape of clinical research. In light of this opportunity, multiple agencies, including the National Academy of Medicine and the U.S. Food and Drug Administration, have promoted the restructuring of current healthcare systems to incorporate clinical research into a practice-based model of evidence generation called the “learning healthcare system” (1, 2), which relies on the EHR to generate “real-world evidence” by capturing data from routine clinical encounters that can be aggregated and analyzed to further research and improve patient care.

The VA is the largest integrated healthcare system in the United States and consists of a network of 171 hospitals and more than 1,000 community-based outpatient clinics, which provide longitudinal comprehensive care to over 9 million Veterans. Although historically predominantly male and non-Hispanic White, the Veteran population is becoming increasingly diverse, driven by a doubling of the female Veteran population and a 13% increase in Veterans from racial minority groups (3). In addition to providing comprehensive clinical care, the VA conducts more than $1 billion in research annually, spanning the continuum of basic to implementation science (4). Three innovations have accelerated VA research and can be leveraged to bridge current evidence and practice gaps in ILD (Figure 1):

1.

The VA Corporate Data Warehouse, a central repository with over 20 years of enterprise-wide electronic health record data;

2.

The Million Veteran Program (MVP), a genetic data repository that conducts array-based genotyping on blood samples in parallel with whole-genome sequencing and is now one of the world’s largest and most diverse genomic programs (5);

3.

Military exposure registries, in which patients self-enroll and self-report occupational and environmental exposures that are not routinely found in EHRs (6).

Here we propose a research agenda that can leverage these resources to improve outcomes for patients with ILD across five key domains: epidemiology, prognostication, intervention, patient engagement, and healthcare delivery (Table 1).

Table 1. Priority research areas and sample study questions

Priority Research AreasSample Study Questions
Epidemiology
  • What are the incidence and prevalence of fibrotic lung diseases?

  • How often are interstitial lung abnormalities detected on routine CT scans?

  • What population-level risk factors contribute to the development of interstitial lung disease?

  • How do military exposures fit into current disease models?

Prognostication
  • Which subset of patients with interstitial lung abnormalities develop pulmonary fibrosis?

  • What risk factors are associated with progressive disease?

  • How do we identify patients at risk for progressive disease at index diagnosis?

  • Can machine learning algorithms be used for early detection and disease prognostication?

  • How can we develop a precision medicine approach to ILD?

Intervention
  • What current therapeutics could be repurposed for treatment of ILD?

  • Which patients are most likely to benefit from antiinflammatory medications vs. antifibrotics?

Patient Engagement
  • How can home-based monitoring and wearable devices improve patient engagement with care?

  • What are patients’ treatment preferences?

  • What interventions improve patient-reported outcomes?

Healthcare Delivery
  • How can we improve the timeliness of diagnosis and engagement with subspecialty care?

  • What proportion of eligible patients are receiving guideline-concordant care?

  • What is the optimal care model for equitable delivery of complex subspecialty care?

  • How can machine learning be used to identify patients with ILD and facilitate early access to care?

Definition of abbreviations: CT = computed tomography; ILD = interstitial lung disease.

Epidemiology

A robust understanding of disease epidemiology, including geographic distribution, demographic, environmental, and occupational risk factors is foundational to ILD research. Understanding the population-level epidemiology of ILD has been challenging, in part because of limited generalizability of early studies, which relied on individual patient recruitment from tertiary care referral centers, oversampled severe disease, and underestimated population-level burden. Recent literature has leveraged claims data to study “real-world” epidemiology and demonstrated that the prevalence of ILD is high in the Veteran population (7). However, claims data are limited to diagnosis, procedures, medications, and costs. In contrast, EHR data can generate more nuanced “computable phenotypes” that incorporate granular structured information, such as lab test results, and unstructured data elements, such as clinical notes and imaging. These computable phenotypes can be used to study the natural history of disease and identify factors that predict outcomes. The VA has been an international leader in this field, with a robust EHR data warehouse dating back to the 1990s, and is uniquely poised to build on existing epidemiology research by leveraging the EHR to identify ILD patients for cohort development that can be used to study the population prevalence and geographic distribution of fibrotic lung diseases. Additionally, the VA’s national lung cancer screening program, which aims to conduct computed tomography scans for approximately 900,000 eligible Veterans, has the power to detect early ILD in an at-risk group. Paired with genetic and exposure data (6), this type of population-level analysis could lend important insight into novel ILD risk factors, their pathogenic mechanisms, and targets for prevention and intervention.

Prognostication

The treatment and disease trajectory of ILD varies. Idiopathic pulmonary fibrosis is generally considered the most severe type of ILD. However, a growing body of literature suggests that other ILDs may also progress (8). Identifying which patients are at risk for progressive disease at index diagnosis and developing a personalized approach to treatment have remained elusive because of the small sample sizes of prior cohorts with limited power for subphenotyping. Progress in this area will require integration of large quantities of clinical and “omics” data—such as genomics, proteomics, radiomics—and new machine learning algorithms for biological endotype discovery, phenotypic refinement, and clinical outcome prediction (9). The VA has the clinical and “omics” data and the sample size to support this work. Oncology research has demonstrated that this type of analysis can lead to targeted therapies and patient-level prognostication. Expanding this precision medicine approach to ILD holds the promise of identifying optimal treatment for those patients who will derive maximum benefit while withholding the same treatment from those who will not benefit or may even be harmed.

Intervention

Randomized, double-blind, placebo-controlled trials are considered the gold standard for the evaluation of new therapeutics. However, traditional clinical trial methodology is costly, cumbersome, and often lacks generalizability beyond the narrowly defined eligible populations. For rare diseases such as ILD, limited clinical trial sample sizes that lack the power to detect changes in meaningful secondary endpoints pose an additional challenge. Pragmatic trials, such as the CleanUP idiopathic pulmonary fibrosis trial, have emerged as a method to more efficiently generate new evidence that is generalizable (10). Additionally, randomized, embedded, multifactorial, adaptive platforms (REMAPs) such as those that emerged during the severe acute respiratory syndrome coronavirus 2 (SARS CoV-2) pandemic can facilitate rapid evidence generation and test multiple interventions simultaneously. A global effort is currently underway to develop a REMAP program for ILD (11). EHR tools can be used for eligibility screening, recruitment, follow-up activities, and endpoint evaluation in these trials, thus decreasing inefficiencies without increasing risk to participants. The VA has already demonstrated that existing infrastructure can be used to conduct pragmatic trials in pain and posttraumatic stress disorder; it is, therefore, ideally situated to lead these multisite trials in ILD.

Patient Engagement

Physiologic metrics such as pulmonary function tests have historically been the primary endpoint in ILD research. However, a growing sentiment among physicians and patients alike recognizes that patient-reported outcome measures (PROMs) should complement physiologic endpoints (12). However, integrating PROMs, which have traditionally been measured through questionnaires, has been challenging. Engaging patients through web-based applications can be more efficient, comprehensive, and cost-effective. Additionally, data derived from home-based monitoring by means of wearable devices, activity trackers, and portable spirometry can provide objective data points to complement PROMs, identify clinically important changes occurring between visits, and improve patient engagement. The VA has already built a robust infrastructure to support mobile applications and remote monitoring technologies and has workflows that allow for real-time data sharing to ensure its effective use for patient care. During the peak of the SARS CoV-2 pandemic, Veterans logged into the VA video connect app more than 120,000 times a week, triggering a $1 billon commitment to further expand remote monitoring platforms in the VA. The VA telehealth platform’s continued success will also facilitate improved access to care by allowing Veterans living in remote areas to remain engaged in subspecialty care.

Healthcare Delivery

Advances in evidence do not produce health benefits for patients unless they are translated into practice. Recent studies have demonstrated that ILD diagnosis is often delayed and that uptake of novel therapeutics outside of subspecialty centers is low (13). Clinical data sets from the EHR represent a robust means by which to evaluate real-world care patterns and identify population-level gaps between what is known from research evidence and actual clinical practice (evidence-practice gap). The national scope of the VA’s healthcare system is ideally positioned to study these natural variations in healthcare delivery, uncover factors that influence quality of ILD care, and test care delivery interventions. Overcoming diagnostic delays and improving access are fundamental to the VA’s mission and will require innovations in identifying patients with ILD early through EHR algorithms (14) or new machine-learning technology. It will also require further investment in digital care infrastructure for patients living outside major academic catchment networks. Before the SARS CoV-2 pandemic, which saw rapid expansion of telehealth, the VA was already at the forefront of using digital health to transform how Veterans access high-quality care through both synchronous (e.g., video visits) and asynchronous communication (e.g., wearable devices) with care teams. Using these tools to study quality, safety, and outcomes and developing interventions to address care gaps will help bridge the current evidence-to-practice gap in ILD.

There are some inherent limitations with using VA data because of the demographics of the source population. Approximately 90% of Veterans are male, and 66% are White. Thus, thoughtful study design that utilize methods such as enrichment targets or subgroup analyses are necessary to ensure equitable representation across demographic categories. This is feasible, as there are approximately 1 million female Veterans and 2 million Veterans from racial minorities enrolled in the VA. In addition, 30% of Veterans live in rural areas, which provides a unique opportunity to understand the impact of rurality and socioeconomic disadvantage on ILD across the spectrum of research.

A number of challenges must be overcome to realize the ILD research opportunities within the VA. First, there are a limited number of ILD researchers within the VA. Hiring additional experts and partnering with academic affiliates are potential solutions. Second, privacy issues have historically made access to VA data sources challenging for academic partners; however, there are efforts underway to create deidentified datasets that would be available to non-VA investigators. Third, although the national VA Cooperative Studies Program has served as an international resource for phase III and phase IV clinical trials, the research infrastructure at VA facilities is less well adapted for early-phase studies of new therapeutics (15). Fourth, exposure registries rely on patient self-report and are thus susceptible to selection and recall bias. Further integrating Department of Defense health and exposure records with VA EHR data and leveraging the expertise of the Environmental Protection Agency would facilitate objective identification of exposures and dose data. Finally, although there are tremendous resources within individual government agencies, these resources are not always coordinated. For example, the National Institutes of Health (NIH) has a long track record of supporting ILD research and unique expertise in genetics. Crosstalk between the VA MVP and the NIH could more rapidly make progress in gene-environment interaction studies and ILD prognostication. The PACT Act, which directs the VA to convene interagency working groups, provides an impetus for such crosstalk, which once operationalized, could leverage the three key VA data sources—the Corporate Data Warehouse, the Million Veteran Program, and military exposure registries—to efficiently answer questions across the domains of epidemiology, prognostication, intervention, patient engagement, and healthcare delivery to transform ILD care.

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3. National Center for Veterans Analysis and Statistics. Washington, DC: U.S. Department of Veterans Affairs; 2023 [updated 2023 Jan 4; accessed 2022 Dec 15]. Available from: https://www.va.gov/vetdata/.
4. Kilbourne AM, Schmidt J, Edmunds M, Vega R, Bowersox N, Atkins D. How the VA is training the Next-Generation workforce for learning health systems. Learn Health Syst 2022;6:e10333.
5. Hunter-Zinck H, Shi Y, Li M, Gorman BR, Ji SG, Sun N, et al.; VA Million Veteran Program. Genotyping array design and data quality control in the Million Veteran Program. Am J Hum Genet 2020;106:535548.
6. Public health: military exposures. Washington, DC: U.S. Department of Veterans Affairs; 2022 [updated 2022 Nov 7; accessed 2022 Dec 15]. Available from: https://www.publichealth.va.gov/exposures/.
7. Kaul B, Lee JS, Zhang N, Vittinghoff E, Sarmiento K, Collard HR, et al. Epidemiology of idiopathic pulmonary fibrosis among U.S. veterans, 2010–2019. Ann Am Thorac Soc 2022;19:196203.
8. Raghu G, Remy-Jardin M, Richeldi L, Thomson CC, Inoue Y, Johkoh T, et al. Idiopathic pulmonary fibrosis (an update) and progressive pulmonary fibrosis in adults: an official ATS/ERS/JRS/ALAT clinical practice guideline. Am J Respir Crit Care Med 2022;205:e18e47.
9. Maher TM, Nambiar AM, Wells AU. The role of precision medicine in interstitial lung disease. Eur Respir J 2022;60:2102146.
10. Ford I, Norrie J. Pragmatic trials. N Engl J Med 2016;375:454463.
11. REMAP-ILD: The future of clinical trials in pulmonary fibrosis. Peterborough, United Kingdom: Action for Pulmonary Fibrosis; 2022. [accessed 2022 Dec 15] Available from: https://www.actionpf.org/news/remap-ild-the-future-of-clinical-trials-in-pulmonary-fibrosis.
12. Aronson KI, Danoff SK, Russell AM, Ryerson CJ, Suzuki A, Wijsenbeek MS, et al. Patient-centered outcomes research in interstitial lung disease: an official American Thoracic Society research statement. Am J Respir Crit Care Med 2021;204:e3e23.
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14. Onishchenko D, Marlowe RJ, Ngufor CG, Faust LJ, Limper AH, Hunninghake GM, et al. Screening for idiopathic pulmonary fibrosis using comorbidity signatures in electronic health records. Nat Med 2022;28:21072116.
15. VA Cooperative Studies Program (CSP). Washington, DC: Office of Research and Development, U.S. Department of Veterans Affairs; 2018 [updated 2018 May 31; accessed 2022 Dec 15]. Available from: https://www.research.va.gov/programs/csp/.
Correspondence and requests for reprints should be addressed to Bhavika Kaul, M.D., M.A.S., Department of Medicine, University of California, San Francisco, 513 Parnassus Avenue, HSE 1314, San Francisco, CA 94143. E-mail: .

Supported by the NHLBI under award K12HL138046, the Pulmonary Fibrosis Foundation, VA Measurement Science Quality Enhancement Research Initiative (QUE 15-283), and VA Center for Innovations in Quality, Effectiveness and Safety (IQuESt CIN 13-413). The views expressed in the article are those of the authors and do not necessarily reflect the position or policy of the Department of Veterans Affairs or the United States Government.

Author disclosures are available with the text of this article at www.atsjournals.org.

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